Spaces
Collaborative research workspaces for bioinformatics. Combine notebooks, data, protocols, and metadata in one place — version-controlled, reproducible, and publication-ready.
broad-genomics/brca-variant-calling
PublishedEnd-to-end BRCA1/2 clinical variant calling pipeline with GATK best practices, annotation with ClinVar, and automated pathogenicity classification.
stanford-lab/scrna-mouse-cortex
ActiveSingle-cell RNA-seq atlas of the mouse cortex across developmental timepoints. Cell type annotation, trajectory analysis, and cross-species comparison.
embl-ebi/metagenomic-soil-diversity
PublishedComprehensive soil metagenomics study across European biomes. Taxonomic profiling, functional annotation, and antimicrobial resistance gene discovery.
sanger-institute/malaria-drug-resistance
Under ReviewGenomic surveillance of antimalarial drug resistance markers in Plasmodium falciparum. Population structure, selection analysis, and resistance prediction.
community/rnaseq-deseq2-tutorial
Published FeaturedStep-by-step RNA-seq differential expression analysis with DESeq2. From raw counts to publication-ready figures, with detailed explanations at every step.
cyanea/space-template-genomics
Published TemplateStarter template for genomics research workspaces. Pre-configured notebooks, QC checklists, metadata schemas, and FAIR compliance scaffolding.
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