Spaces
Collaborative research workspaces for bioinformatics. Combine notebooks, data, protocols, and metadata in one place — version-controlled, reproducible, and publication-ready.
Example spaces
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cyanea
RNA-seq DESeq2 Workflow
Complete RNA-seq differential expression analysis from raw counts to publication-ready figures using DESeq2.
cyanea
16S Amplicon Analysis
16S rRNA amplicon analysis for microbial community profiling using DADA2 and phyloseq.
cyanea
scRNA-seq PBMC Analysis
Single-cell RNA-seq analysis of human PBMCs from 10x Chromium data — clustering, annotation, and differential expression.
Why use Spaces
Everything your research needs in one version-controlled workspace.
Organize
Combine notebooks, datasets, protocols, and files in one workspace. Every change is version-controlled with full history.
Reproduce
Pinned dependencies and deterministic execution mean anyone can reproduce your results exactly as you ran them.
Publish
Export to publication formats, mint DOIs, and share FAIR-compliant research with the community.
All Spaces
RNA-seq DESeq2 Workflow
Official
cyanea
Complete RNA-seq differential expression analysis from raw counts to publication-ready figures using DESeq2.
16S Amplicon Analysis
Official
cyanea
16S rRNA amplicon analysis for microbial community profiling using DADA2 and phyloseq.
scRNA-seq PBMC Analysis
Official
cyanea
Single-cell RNA-seq analysis of human PBMCs from 10x Chromium data — clustering, annotation, and differential expression.
Genome Assembly QC
Official
cyanea
De novo genome assembly quality assessment with QUAST, BUSCO, and assembly polishing workflows.
GATK Variant Calling
Official
cyanea
GATK best practices variant calling pipeline for whole-genome and exome sequencing data.
Create a Space
Start a new research workspace. Bring your data, attach protocols, and write interactive notebooks — all version-controlled and publication-ready.
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