The Cyanea Crate Ecosystem
13 Rust crates and 6 browser tools for high-performance bioinformatics. From sequence parsing to GPU-accelerated analysis, built for correctness and speed.
cyanea-core v0.4.2
Foundation types and traits shared across the ecosystem. Alphabets, coordinate systems, error types, and memory-efficient collections.
cyanea-seq v0.3.8
Biological sequence types — DNA, RNA, protein. 2-bit encoding, k-mer generation, reverse complement, and translation tables.
cyanea-io v0.3.5
High-performance parsers and writers for bioinformatics formats. FASTA, FASTQ, VCF, BAM/SAM, GFF3, BED, and more.
cyanea-align v0.2.4
Sequence alignment algorithms — Smith-Waterman, Needleman-Wunsch, minimap2-compatible chaining, and banded alignment with SIMD.
cyanea-omics v0.2.1
Multi-omics data structures. Sparse and dense expression matrices, AnnData-compatible objects, and differential expression utilities.
cyanea-stats v0.3.0
Statistical computing for bioinformatics. Hypothesis testing, multiple testing correction, survival analysis, and Bayesian inference.
cyanea-ml v0.1.3
Machine learning primitives for biological data. Dimensionality reduction (PCA, UMAP, t-SNE), clustering, and classification.
cyanea-chem v0.2.0
Chemical informatics — molecular fingerprints, SMILES parsing, substructure search, and molecular descriptor calculation.
cyanea-struct v0.1.7
Biological structure handling — PDB/mmCIF parsing, 3D coordinate systems, secondary structure annotation, and contact maps.
cyanea-phylo v0.2.6
Phylogenetic tree construction and manipulation. Newick/Nexus parsing, distance matrices, neighbor-joining, and tree comparison metrics.
cyanea-gpu v0.1.0
GPU-accelerated compute kernels via wgpu. Pairwise alignment, k-mer counting, and matrix operations on GPU hardware.
cyanea-wasm v0.3.1
WebAssembly bindings for browser-based bioinformatics. Powers Cyanea Spaces with near-native performance in the browser.
Browser Tools
Interactive bioinformatics tools running entirely in your browser — powered by WebAssembly. No installation, no uploads to external servers.
cyanea/sequence-viewer
WASMView and inspect FASTA/FASTQ files directly in your browser. Syntax highlighting, search, and quality score visualization.
cyanea/alignment-viewer
WASM PopularInteractive BAM/SAM alignment viewer with pileup visualization, variant highlighting, and coverage plots. Zero server needed.
cyanea/vcf-explorer
WASMExplore VCF files with filtering, sorting, and annotation lookups. Supports multi-sample VCFs with genotype visualization.
community/phylo-tree
WASM FeaturedInteractive phylogenetic tree viewer with support for Newick and Nexus formats. Circular, radial, and rectangular layouts.
community/fastq-qc
WASM NewBrowser-based FASTQ quality control reports. Generate per-base quality, adapter content, and GC distribution plots client-side.
cyanea/format-converter
WASMConvert between bioinformatics file formats in your browser. Supports FASTA, FASTQ, SAM, VCF, BED, GFF3, and more.
Contribute to the ecosystem
The Cyanea crate ecosystem is open source. Report issues, submit pull requests, or build something new on top of it.
View on GitHub